rnashape

 



This web application reads a set of data values obtained by an RNA SHAPE experiment based on the reagent NMIA. It assumes that gels have been quantified using the Safa software and that values corresponding to a control experiment (an experiment performed without NMIA) have been subtracted from the data values. The input and output format is described in more detail in the help file.
Detailed Instructions
List of RNA SHAPE signal values

Index of first nucleotide

 9

 13.5

 18

Choose NMIA concentration closest to the experimental conditions

If unchecked (default), a sliding-window approach is used for SHAPE data sets corresponding to more than 90 nucleotides.